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2018pipeline [2018/09/11 15:26]
david [Pipeline script]
2018pipeline [2018/09/11 15:34]
david [Pipeline script]
Line 508: Line 508:
    ​out_fasta="​$gene_id_trimmed.fa"​    ​out_fasta="​$gene_id_trimmed.fa"​
    ###########​ run the command! #############​    ###########​ run the command! #############​
-   ​faFrag $in_fasta $chrom_start $chrom_end $out_fasta+   echo "​Running faFrag on $gene_id_trimmed"​ 
 +   faFrag $in_fasta $chrom_start $chrom_end $out_fasta ​||  echo ">>>>>>>>>>>​There was a problem with: '​$line'<<<<<<<<<<<<<<<"​
    
 done < tmpfile.gff done < tmpfile.gff
2018pipeline.txt · Last modified: 2018/09/11 15:44 by david