User Tools

Site Tools


2018pipeline

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Last revision Both sides next revision
2018pipeline [2018/09/11 15:32]
david [Pipeline script]
2018pipeline [2018/09/11 15:34]
david [Pipeline script]
Line 508: Line 508:
    ​out_fasta="​$gene_id_trimmed.fa"​    ​out_fasta="​$gene_id_trimmed.fa"​
    ###########​ run the command! #############​    ###########​ run the command! #############​
-   ​faFrag $in_fasta $chrom_start $chrom_end $out_fasta ||  echo ">>>>>>>>>>>>>>>​>>>>>>>>>>>​There was a problem with: '​$line'​<<<<<<<<<<<<<<<<<<<<<<<​<<<<<<<<<<<<<<<"​+   echo "​Running faFrag on $gene_id_trimmed"​ 
 +   faFrag $in_fasta $chrom_start $chrom_end $out_fasta ||  echo ">>>>>>>>>>>​There was a problem with: '​$line'<<<<<<<<<<<<<<<"​
    
 done < tmpfile.gff done < tmpfile.gff
2018pipeline.txt · Last modified: 2018/09/11 15:44 by david