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assignment5 [2018/10/18 08:55]
dokuroot
assignment5 [2018/10/18 09:01]
dokuroot
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 ====Exercise 2==== ====Exercise 2====
  
-Write a function, ''​miRNA_counter(input_fastq_file,​ input_fasta_file,​ output_file)'',​ that counts the number of times each miRNA in a list appears in a small RNA high-throughput sequencing library.+Write a function, ''​miRNA_counter(input_fastq_file,​ input_fasta_file,​ output_file)'',​ that counts the number of times each miRNA in a fasta file appears in a small RNA high-throughput sequencing library. 
 + 
 +fastq file: [[ http://​rna.colostate.edu/​dokuwiki/​doku.php?​id=sample_data | small_RNAs.fastq]]\\ 
 +fasta file: [[ http://​rna.colostate.edu/​dokuwiki/​doku.php?​id=sample_data | c_elegans_miRNAs.fa]]
  
 The function should: The function should:
Line 57: Line 60:
   let-7 1   let-7 1
   lin-4 0   lin-4 0
- 
assignment5.txt · Last modified: 2018/10/20 17:37 by dokuroot