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assignments:assignment4key [2018/09/10 09:19]
erin
assignments:assignment4key [2018/09/10 09:19] (current)
erin
Line 11: Line 11:
     5th wc - l: This counts the number of lines     5th wc - l: This counts the number of lines
  
-2.  
  
 +2. 
   A. cut -f 3 saccer3_annotation.gtf | sort | uniq   A. cut -f 3 saccer3_annotation.gtf | sort | uniq
   B.    B. 
Line 18: Line 18:
     sort features_tmp.txt > features_sorted_tmp.txt     sort features_tmp.txt > features_sorted_tmp.txt
     uniq features_sorted_tmp.txt     uniq features_sorted_tmp.txt
 +
  
 3.  3. 
Line 23: Line 24:
   B. login node, compile node   B. login node, compile node
   C. compute nodes   C. compute nodes
 +  ​
   ​   ​
 4.  4. 
Line 29: Line 31:
   C. # compresses a genome   C. # compresses a genome
   D. tells slurm to allot 1 core for the job   D. tells slurm to allot 1 core for the job
 +  ​
   ​   ​
 Quesiton 5 Quesiton 5
Line 35: Line 38:
   C. sbatch bowtie_align.sh   C. sbatch bowtie_align.sh
   D. squeue -u $USER   D. squeue -u $USER
 +  ​
 </​code>​ </​code>​
assignments/assignment4key.txt ยท Last modified: 2018/09/10 09:19 by erin