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assignments:rna2018_assignment5 [2018/11/29 09:39]
erin
assignments:rna2018_assignment5 [2018/12/04 13:39] (current)
erin
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 Explore the merged .bw files on UCSC Genome browser (link below). Alternatively,​ you can download all or any subset of your own .bam or .bw files and explore them on IGV. Explore the merged .bw files on UCSC Genome browser (link below). Alternatively,​ you can download all or any subset of your own .bam or .bw files and explore them on IGV.
  
-[[https://​genome.ucsc.edu/​cgi-bin/​hgTracks?​db=ce11&lastVirtModeType=default&​lastVirtModeExtraState=&​virtModeType=default&​virtMode=0&​nonVirtPosition=&​position=chrIII%3A10450346-10463101&hgsid=700512377_I6Kh2FX0XAV5lWZsc1dYpcWtlw4r| C. elegans homework genome browser]]+[[http://​genome.ucsc.edu/​cgi-bin/​hgTracks?​hgS_doOtherUser=submit&hgS_otherUserName=Erin%20Osborne&hgS_otherUserSessionName=181120_Celegans_EcoliVBSub| C. elegans homework genome browser]]
  
 The manuscript [[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC5839384/​|Gomez-Orte et al., 2018]] contains a supplemental dataset that lists all the genes that are up-regulated in //E.coli// versus //​B.subtilis//​ independent of temperature. Use the genes on this list to scan through the genome browser. I'm attaching the dataset here: [[assignments:​SupplementalFigure13|Supplemental Dataset 13]] The manuscript [[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC5839384/​|Gomez-Orte et al., 2018]] contains a supplemental dataset that lists all the genes that are up-regulated in //E.coli// versus //​B.subtilis//​ independent of temperature. Use the genes on this list to scan through the genome browser. I'm attaching the dataset here: [[assignments:​SupplementalFigure13|Supplemental Dataset 13]]
assignments/rna2018_assignment5.txt ยท Last modified: 2018/12/04 13:39 by erin