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linux_schedule

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Linux Fall 2018 Schedule

Topics Reading (TLCL) Assignments
Week 1:
Tuesday
August 21 (ERIN)
Course introduction
The terminal
Navigating the file system
Chapters 1, 2 Assignment 1
due Aug 28
Thursday
August 23 (ERIN)
Options
Making & removing
Copying & moving
Wildcards
Working with files I
Getting help
Chapter 3 (ls, less)
Chapters 4-5
Assignment 2
due Aug 28
Enrichment 1
Week 2:
Tuesday
August 28 (ERIN)
File formats
Genomic resources
Redirection
Working with files II
Pipes
More pipes
Chapter 3 (file)
Chapter 6
Chapter 16 (wget)
Chapter 18 (gzip)
Chapter 20 (sort, uniq, cut)
Assignment 3
due Sept 4
Thursday
August 30 (ERIN)
Connecting to remote servers
Intro to supercomputing
Using summit
Parallel Processing
Best practices
Chapter 16 (ssh)
Summit Guide
Assignment 4
due Sept 6
Enrichment 2
Week 3:
Tuesday
September 4 (DK)
Introduction to Scripting ๐Ÿ™‹
Basic Scripting ๐Ÿ™†
Arguments, Intro to Flow Control ๐Ÿ™Ž
Chapters 16, 18 Assignment 5
due Sept 11
Thursday
September 6 (DK)
Loops and More Conditionals ๐Ÿ™‰
Sed and grep ๐Ÿ™Š
Substitutions and regular expressions ๐Ÿ™ˆ
Chapter 19, 24 Assignment 6
due Sept 11
Week 4:
Tuesday
September 11 (DK)
Example Bioinformatics Pipeline ๐Ÿ˜…
Using regular expressions to find sequence motifs ๐Ÿ˜ฅ
Software ๐Ÿ˜
Chapter 27-29
Thursday
September 13 (EN + DK)
Conclusions and future directions
FINAL EXAM See Assignments
linux_schedule.1536614364.txt.gz ยท Last modified: 2018/09/10 15:19 by david