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rnaseq_resources [2018/07/03 14:17]
dokuroot [Software installation]
rnaseq_resources [2018/12/06 09:25]
erin
Line 1: Line 1:
 +
 +====== RNA-seq Resources ======
 +
 ==== Linux cheat sheet ==== ==== Linux cheat sheet ====
  
Line 10: Line 13:
  
  
-==== List of computational biology resources ==== 
- 
-  * {{:​computationalbiologyresources.pdf|Computational biology resources}} 
- 
- 
-==== Software installation ==== 
- 
-==== Lab Notebook Example ==== 
- 
-  * {{:​nsci580a3_lab_notebook-brain-adrenal.txt.gz| Lab notebook}} 
- 
-==== Cuffmerge Output ==== 
- 
-  * {{::​cuffmerge_output.tar|alg-5 cuffmerge}} 
- 
-==== Cuffdiff Output ==== 
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-  * {{::​cuffdiff_output.tar| Cuffdiff results}} 
- 
-==== Brain and Adrenal Tissue ==== 
- 
-  * {{::​merged.gtf.gz| merged.gtf}} 
- 
-==== HTSeq Installation & Instructions ==== 
- 
-  * [[ https://​htseq.readthedocs.io/​en/​release_0.9.1/​install.html | HTSeq Install ]] 
-  * [[ https://​htseq.readthedocs.io/​en/​release_0.9.1/​count.html | HTSeq Instructions ]] 
-  * [[ http://​bioinformatics.oxfordjournals.org/​content/​31/​2/​166.long | HTSeq publication ]] 
-  * Please cite HTSeq when publishing 
  
 ==== R-studio Installation ==== ==== R-studio Installation ====
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 ==== Other RNA-seq Resources ==== ==== Other RNA-seq Resources ====
   * [[ https://​www.youtube.com/​watch?​v=C8RNvWu7pAw&​t=2366s | Kasper Hansen'​s Statistics for Genomics youtube video ]]    * [[ https://​www.youtube.com/​watch?​v=C8RNvWu7pAw&​t=2366s | Kasper Hansen'​s Statistics for Genomics youtube video ]] 
 +
 +==== Please cite all software when publishing ====
  
rnaseq_resources.txt ยท Last modified: 2018/12/06 09:25 by erin