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rnaseq_schedule [2018/12/04 04:09]
erin
rnaseq_schedule [2018/12/06 09:25] (current)
erin
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 | Thursday\\ November 29 (EON)              | [[wiki:​automation|Automating pipelines]] \\ [[https://​github.com/​erinosb/​DSCI512_RNAseqAnalyzers | Automating pipelines2]] \\ [[wiki:​IGV_visualization|Visualizing RNA-seq data using IGV]] \\  [[wiki:​UCSCGB_visualization|Visualizing RNA-seq data using UCSC Genome Browser]] | [[https://​genomebiology.biomedcentral.com/​track/​pdf/​10.1186/​gb-2010-11-10-r106 | Anders et al., 2010]] Due Dec 4 | [[assignments:​rna2018_assignment5|Assignment 5]] \\ due T Dec 11 | | Thursday\\ November 29 (EON)              | [[wiki:​automation|Automating pipelines]] \\ [[https://​github.com/​erinosb/​DSCI512_RNAseqAnalyzers | Automating pipelines2]] \\ [[wiki:​IGV_visualization|Visualizing RNA-seq data using IGV]] \\  [[wiki:​UCSCGB_visualization|Visualizing RNA-seq data using UCSC Genome Browser]] | [[https://​genomebiology.biomedcentral.com/​track/​pdf/​10.1186/​gb-2010-11-10-r106 | Anders et al., 2010]] Due Dec 4 | [[assignments:​rna2018_assignment5|Assignment 5]] \\ due T Dec 11 |
 ^ Week 5:      |                           ​| ​                     |               | ^ Week 5:      |                           ​| ​                     |               |
-| Tuesday\\ December 4 (EON)               | [[wiki:​tidyingProjects| Tidying up Projects]] \\[[wiki:​introtoR|Intro to R]] \\ Differential Expression Analysis ​| [[ http://​www.pnas.org/​content/​pnas/​95/​25/​14863.full.pdf| Eisen et al., 1998]] due T Dec 11 | Assignment 6 due T Dec 11 | +| Tuesday\\ December 4 (EON)               | [[wiki:​tidyingProjects|Tidying up Projects]] \\ [[wiki:​introtoR|Intro to R]] \\ {{ :​181204_deseq2_slides.pdf | Intro to DESeq2 }} | [[ http://​www.pnas.org/​content/​pnas/​95/​25/​14863.full.pdf| Eisen et al., 1998]] due T Dec 11 | [[assignments:​rna2018_assignment6|Assignment 6]] due T Dec 11 | 
-| Thursday\\ December 6 (EON)               ​| ​Clustering, Review, & Practice ​| [[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC4994289/​pdf/​13059_2016_Article_1044.pdf|Ziemann et al., 2016]] not due | | +| Thursday\\ December 6 (EON)               ​| ​[[wiki:​DESeq2|Differential Expression Analysis]] \\  ​| [[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC4994289/​pdf/​13059_2016_Article_1044.pdf|Ziemann et al., 2016]] not due | | 
 ^ Finals Week:      |                           ​| ​                     |               | ^ Finals Week:      |                           ​| ​                     |               |
-| Tuesday\\ December 11 (EON) \\ 2:00 - 4:​00pm ​              ​| ​Final Exam | | |+| Tuesday\\ December 11 (EON) \\ 2:00 - 4:​00pm ​              ​| ​[[wiki:​RNAseqexam|In-class ​Exam]] | | |
  
  
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 ^ Week 5:      |                           ​| ​                     |               | ^ Week 5:      |                           ​| ​                     |               |
 | Tuesday\\ December 5 (EN)                | [[wiki2016_RNA_clustering | Intro to clustering ]] \\ [[wiki2016_RNA_reproducible | Reproducible research ]] | | | | Tuesday\\ December 5 (EN)                | [[wiki2016_RNA_clustering | Intro to clustering ]] \\ [[wiki2016_RNA_reproducible | Reproducible research ]] | | |
-| Thursday\\ December 7 (EN)               ​| ​In-class Exam | | |+| Thursday\\ December 7 (EN)               ​| ​ | | |
 */ */
  
  
  
-[[wiki:​automation2|Automating pipelines 2]] 
- 
-[[wiki:​IGV_visualization|Visualizing RNA-seq data using IGV]] 
- 
-[[wiki:​UCSCGB_visualization|Visualizing RNA-seq data using UCSC Genome Browser]] 
rnaseq_schedule.1543921749.txt.gz · Last modified: 2018/12/04 04:09 by erin