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rnaseq_schedule

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RNA-seq Fall 2018 Schedule


Topics Reading Assignments
Week 1:
Tuesday
November 6 (EON)
RNA-seq Intro & Experimental Design
Testing SUMMIT
Conesa et al., 2016
Due T Nov 13
Assignment 1
due T Nov 13
Thursday
November 8 (DCK)
Pre-processing & Quality control Li et al., 2015
Due T Nov 13
Assignment 2
due T Nov 13
Week 2:
Tuesday
November 13 (EON)
NO CLASS - Graduate Student Showcase
Thursday
November 15 (EON)
Alignment slides
Overview of alignment slides
Building HISAT2 Indexes
Downloading additional files
Extra: Syncing
Costa-Silva et al., 2017 due T Nov 27 Assignment 3
due T Nov 27
Week 3:
Tuesday
November 20
NO CLASS - Break
Thursday
November 22
NO CLASS - Break
Week 4:
Tuesday
November 27 (EON)
Organizing Computational Projects
Writing a Basic Pipeline
Tabulation
hisat2 blog post due T Dec 4 Assignment 4
due T Dec 4
Thursday
November 29 (EON)
Automating pipelines
Automating pipelines2
Visualizing RNA-seq data using IGV
Visualizing RNA-seq data using UCSC Genome Browser
Anders et al., 2010 Due Dec 4 Assignment 5
due T Dec 11
Week 5:
Tuesday
December 4 (EON)
Tidying up Projects \\Intro to R
Differential Expression Analysis
Eisen et al., 1998 due T Dec 11 Assignment 6 due T Dec 11
Thursday
December 6 (EON)
Clustering, Review, & Practice Ziemann et al., 2016 not due
Finals Week:
Tuesday
December 11 (EON)
2:00 - 4:00pm
Final Exam

Automating pipelines 2

Visualizing RNA-seq data using IGV

Visualizing RNA-seq data using UCSC Genome Browser

rnaseq_schedule.1543921764.txt.gz · Last modified: 2018/12/04 04:09 by erin