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Fall 2018 Schedule
| Topics | Reading | Assignments | |
|---|---|---|---|
| Week 1 | |||
| Tuesday August 21 | Introduction to Bioinformatics and Genomics slides | ||
| Thursday August 23 | DNA Sequencing Lab slides | Exercise 1 | |
| Week 2 | |||
| Tuesday August 28 | Unix Lab slides | Exercise 2 | |
| Thursday August 30 | Introduction to Computer Programming slides | Directories Exercise | |
| Week 3 | |||
| Tuesday September 4 | Bash Scripting slides | Exercise 3 | |
| Thursday September 6 | Sequence Alignments slides | Exercise 4 | |
| Week 4 | |||
| Tuesday September 11 | Python Lab 1 slides | Python for Everyone, Ch 1 | Exercise 5 (pdf) |
| Thursday September 13 | Python Lab 2 | Python for Everyone, Ch 2 | Exercise 6 (pdf) |
| Week 5 | |||
| Tuesday September 18 | Python Lab 3 | Exercise 7 (pdf) |
|
| Thursday September 20 | Exam 1 study guide key | ||
| Week 6 | |||
| Tuesday September 25 | Next Gen Sequencing (NGS) Technologies and Applications slides | Reuter et al. (2015) | Reading 1 |
| Thursday September 27 | The Human Genome slides | Human Genome (2001) | |
| Week 7 | |||
| Tuesday October 2 | Genome Assembly Lab 1 slides | Zerbino et al. (2008) | Exercise 8 |
| Thursday October 4 | Genome Assembly Lab 2 | ||
| Week 8 | |||
| Tuesday October 9 | CRISPR and Genome Editing slides | Cong et al. (2013) | Reading 2 |
| Thursday October 11 | Read Mapping Lab 1 slides | Trapnell et al. (2009) | Exercise 9 |
| Week 9 | |||
| Tuesday October 16 | Read Mapping Lab 2 | Boyle et al. (2017) | Reading 3 |
| Thursday October 18 | Genetic Variation and Disease Genomics slides | ||
| Week 10 | |||
| Tuesday October 23 | Searching and manipulating large datasets | Pasquinelli et al (2000) Review article | Writing 1 |
| Thursday October 25 | Exam 2 study guide key | ||
| Week 11 | |||
| Tuesday October 30 | Non-coding RNAs slides | Cech and Steitz (2014) | Reading 4 |
| Thursday November 1 | Small RNAs Lab 1 slides | Exercise 10 Wr Due | |
| Week 12 | |||
| Tuesday November 6 | Small RNAs Lab 2 | Exercise 11 | |
| Thursday November 8 | Small RNAs Lab 3 | Exercise 12 | |
| Week 13 | |||
| Tuesday November 13 | No class | Makeup Assignment | |
| Thursday November 15 | RNA-seq Data Analysis slides | Exercise 13 | |
| Week 14 | |||
| Tuesday November 20 | Thanksgiving break | ||
| Thursday November 22 | Thanksgiving break | ||
| Week 15 | |||
| Tuesday November 27 | RNA-seq Lab 1 slides | Exercise 14 | |
| Thursday November 29 | RNA-seq Lab 2 slides | Exercise 15 | |
| Week 16 | |||
| Tuesday December 4 | RNA-seq Lab 3 slides | Henikoff and Greally (2016) | Exercise 16 Reading 5 |
| Thursday December 6 | Exam 3 study guide practice exam ( key) | Lab Notebook Due |
schedule.txt · Last modified: 2018/12/03 13:54 by dokuroot
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