User Tools

Site Tools


schedule

This is an old revision of the document!


Fall 2018 Schedule


Topics Reading Assignments
Week 1
Tuesday
August 21
Introduction to Bioinformatics and Genomics
slides
Thursday
August 23
DNA Sequencing Lab
slides
Exercise 1
Week 2
Tuesday
August 28
Unix Lab
slides
Exercise 2
Thursday
August 30
Introduction to Computer Programming
slides
Directories Exercise
Week 3
Tuesday
September 4
Bash Scripting
slides
Exercise 3
Thursday
September 6
Sequence Alignments
slides
Exercise 4
Week 4
Tuesday
September 11
Python Lab 1
slides
Python for Everyone, Ch 1 Exercise 5
(pdf)
Thursday
September 13
Python Lab 2 Python for Everyone, Ch 2 Exercise 6
(pdf)
Week 5
Tuesday
September 18
Python Lab 3 Exercise 7
(pdf)
Thursday
September 20
Exam 1
study guide
Practice exam ( key)
Week 6
Tuesday
September 25
Next Gen Sequencing (NGS) Technologies and Applications
slides
Reuter et al. (2015) Reading 1
Thursday
September 27
The Human Genome
slides
Human Genome (2001)
Week 7
Tuesday
October 2
Genome Assembly Lab 1
slides
Zerbino et al. (2008) Exercise 8
Thursday
October 4
Genome Assembly Lab 2
Week 8
Tuesday
October 9
CRISPR and Genome Editing
slides
Cong et al. (2013) Reading 2
Thursday
October 11
Read Mapping Lab 1
slides
Trapnell et al. (2009) Exercise 9
Week 9
Tuesday
October 16
Read Mapping Lab 2 Boyle et al. (2017) Reading 3
Thursday
October 18
Genetic Variation and Disease Genomics
slides
Week 10
Tuesday
October 23
Searching and manipulating large datasets
Pasquinelli et al (2000)
Review article
Writing 1
Thursday
October 25
Exam 2 study guide
Practice exam ( key)
Week 11
Tuesday
October 30
Non-coding RNAs
slides
Cech and Steitz (2014) Reading 4
Thursday
November 1
Small RNAs Lab 1
slides
Exercise 10 Wr Due
Week 12
Tuesday
November 6
Small RNAs Lab 2 Exercise 11
Thursday
November 8
Small RNAs Lab 3 Exercise 12
Week 13
Tuesday
November 13
No class Makeup Assignment
Thursday
November 15
Regulation of Gene Expression Exercise 13
Week 14
Tuesday
November 20
Thanksgiving break
Thursday
November 22
Thanksgiving break
Week 15
Tuesday
November 27
RNA-seq Lab 1 Exercise 14
Thursday
November 29
RNA-seq Lab 2 Exercise 15
Week 16
Tuesday
December 4
RNA-seq Lab 3
Epigenetics
Henikoff and Greally (2016) Exercise 16
Reading 5
Thursday
December 6
Exam 3
Lab Notebook Due
schedule.1541524065.txt.gz · Last modified: 2018/11/06 10:07 by dokuroot