User Tools

Site Tools


schedule

This is an old revision of the document!


Fall 2018 Schedule


Topics Reading Assignments
Week 1
Tuesday
August 21
Introduction to Bioinformatics and Genomics
slides
Thursday
August 23
DNA Sequencing Lab
slides
Exercise 1
Week 2
Tuesday
August 28
Unix Lab
slides
Exercise 2
Thursday
August 30
Introduction to Computer Programming
slides
Directories Exercise
Week 3
Tuesday
September 4
Bash Scripting
slides
Exercise 3
Thursday
September 6
Sequence Alignments
slides
Exercise 4
Week 4
Tuesday
September 11
Python Lab 1
slides
Python for Everyone, Ch 1 Exercise 5
(pdf)
Thursday
September 13
Python Lab 2 Python for Everyone, Ch 2 Exercise 6
(pdf)
Week 5
Tuesday
September 18
Python Lab 3 Exercise 7
(pdf)
Thursday
September 20
Exam 1
study guide
( key)
Week 6
Tuesday
September 25
Next Gen Sequencing (NGS) Technologies and Applications
slides
Reuter et al. (2015) Reading 1
Thursday
September 27
The Human Genome
slides
Human Genome (2001)
Week 7
Tuesday
October 2
Genome Assembly Lab 1
slides
Zerbino et al. (2008) Exercise 8
Thursday
October 4
Genome Assembly Lab 2
Week 8
Tuesday
October 9
CRISPR and Genome Editing
slides
Cong et al. (2013) Reading 2
Thursday
October 11
Read Mapping Lab 1
slides
Trapnell et al. (2009) Exercise 9
Week 9
Tuesday
October 16
Read Mapping Lab 2 Boyle et al. (2017) Reading 3
Thursday
October 18
Genetic Variation and Disease Genomics
slides
Week 10
Tuesday
October 23
Searching and manipulating large datasets
Pasquinelli et al (2000)
Review article
Writing 1
Thursday
October 25
Exam 2
study guide
key
Week 11
Tuesday
October 30
Non-coding RNAs
slides
Cech and Steitz (2014) Reading 4
Thursday
November 1
Small RNAs Lab 1
slides
Exercise 10 Wr Due
Week 12
Tuesday
November 6
Small RNAs Lab 2 Exercise 11
Thursday
November 8
Small RNAs Lab 3 Exercise 12
Week 13
Tuesday
November 13
No class Makeup Assignment
Thursday
November 15
RNA-seq Data Analysis
slides
Exercise 13
Week 14
Tuesday
November 20
Thanksgiving break
Thursday
November 22
Thanksgiving break
Week 15
Tuesday
November 27
RNA-seq Lab 1
slides
Exercise 14
Thursday
November 29
RNA-seq Lab 2
slides
Exercise 15
Week 16
Tuesday
December 4
RNA-seq Lab 3
slides
Henikoff and Greally (2016) Exercise 16
Reading 5
Thursday
December 6
Exam 3
study guide
practice exam ( key)
Lab Notebook Due
schedule.1543870456.txt.gz · Last modified: 2018/12/03 13:54 by dokuroot