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script:bowtiewrapper [2018/10/30 12:04]
dokuroot created
script:bowtiewrapper [2018/10/30 12:05] (current)
dokuroot
Line 1: Line 1:
 +=== Bowtie Wrapper Script ===
  
 +<file python bowtie_wrapper.py>​
 +
 + 
 import argparse import argparse
 import subprocess import subprocess
Line 5: Line 9:
 '''​ '''​
 Functions for trimming and mapping reads Functions for trimming and mapping reads
 +Author: Tai Montgomery, Oct. 22, 2018
 Command line usage: Command line usage:
 python3 bowtie_wrapper.py -i '​input_file'​ -o '​output_'​file - p '​path_to_bowtie_index'​ python3 bowtie_wrapper.py -i '​input_file'​ -o '​output_'​file - p '​path_to_bowtie_index'​
Line 43: Line 47:
  map(path, trimmed_file)  map(path, trimmed_file)
  print('​See bowtie_stderr.txt'​)  print('​See bowtie_stderr.txt'​)
 +</​file>​
script/bowtiewrapper.txt ยท Last modified: 2018/10/30 12:05 by dokuroot