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wiki:detour

A brief detour

We need to reorganize our folder a little bit.

Log into SUMMIT using secure shell

$ ssh -l <youreID@colostate.edu> login.rc.colorado.edu
# Prompted for Password: <your eID Password>,push #Note, you won't see anything being typed
# Switch to your cell phone and OK the transaction using DUO Key
OR
#Prompted for Password: <your eID password>,<duoKEY>

secure shell to scompile

$ ssh scompile

navigate to your /scratch/summit/eID@colostate.edu space

$ cd /scratch/summit/eID@colostate.edu # Replace <eID> with your eID

navigate into the folder that contains activate.bashrc

$ cd DSCI512_RNAseq
$ cd PROJ01_testsummit
$ cd summit-rna-seq-setup
$ ls    # You should be able to see two things of importance: activate.bashrc and bin

copy activate.bashrc and bin higher up in your directory tree to /scratch/summit/eID@colostate.edu

$ cp activate.bashrc /scratch/summit/eID@colostate.edu  #replace <eID> with your eID
$ cp -R bin /scratch/summit/eID@colostate.edu  #replace <eID> with your eID

Back to BUILDING HISAT2

wiki/detour.txt · Last modified: 2018/11/15 09:14 by erin