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wiki:igv_visualization [2018/11/29 06:32]
erin
wiki:igv_visualization [2019/12/05 08:54]
erin
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   * Open IGV   * Open IGV
-  * From the drop down menu, select ''​S.cerevisiae ​(SacCer3)''​+  * From the drop down menu, select ''​Celegans ​(ce11)''​ 
 + 
 +  * From JupyterHub, download ''​EG01_sort.bam''​ and ''​EGO01_sort.bam.bai''​. You can do this by navigating to these files in the file structure, right clicking on them, and selecting **Download**.  
   * From **File**, select **Load from File**   * From **File**, select **Load from File**
-  * Select ​your **sample01_sort.bam** file, making sure that the file **sample01_sort.bam.bai** is located in the same directory+  * Within elect your **EGO01_sort.bam** file, making sure that the file **EGO01_sort.bam.bai** is located in the same directory.
-  * Load **sample03_sort.bam** also.+
  
 ==== A cautionary note about .bam files and scaling ===== ==== A cautionary note about .bam files and scaling =====
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 +[[wiki:​ucscgb_visualization|{{:​wiki:​slide2_arrow.png?​40|}}]][[wiki:​ucscgb_visualization|Visualizing data using UCSC]]
  
wiki/igv_visualization.txt · Last modified: 2019/12/05 09:20 by erin