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wiki:simple_pipeline_3 [2018/11/22 13:27]
erin created
wiki:simple_pipeline_3 [2018/11/22 13:29] (current)
erin
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 # Source the bashrc link to install software # Source the bashrc link to install software
-source /​scratch/​summit/​erinnish@colostate.edu/​activate.bashrc+source /​scratch/​summit/​<eID>@colostate.edu/​activate.bashrc
  
 # Quality control with FASTQC # Quality control with FASTQC
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 # Tabulation of read counts per gene with featureCounts # Tabulation of read counts per gene with featureCounts
-featureCounts -p -Q 20 -T 6 -a /​scratch/​summit/​erinnish@colostate.edu/​DSCI512_RNAseq/​PROJ02_yeastGenome/​181115_Scer_annotation.gtf.gz -o ../​03_output/​feature_counts.txt ../​03_output/​sample01.sam+featureCounts -p -Q 20 -T 6 -a /​scratch/​summit/​<eID>@colostate.edu/​DSCI512_RNAseq/​PROJ02_yeastGenome/​181115_Scer_annotation.gtf.gz -o ../​03_output/​feature_counts.txt ../​03_output/​sample01.sam
  
 </​code>​ </​code>​
 +
 +[[wiki:​tabulation|{{:​wiki:​slide1.jpeg?​40|}}]] [[wiki:​tabulation|Back to tabulation]]
wiki/simple_pipeline_3.1542918471.txt.gz ยท Last modified: 2018/11/22 13:27 by erin