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Reviewed work from yesterday.

Thoughts:

  • e-mail David to ask him how to handle it.
  • Seems to have timed out around sample 12 of 18

Worked on IGV yesterday

  • I think the plan will be to upload a few things in IGV but then to do most of the gazing in UCSC Genome Browser

Running the script again.

  • Set to `source /projects/dcking@colostate.edu/paths.bashrc`
  • Set to p 24
  • Seems to be working
  • Decided to cut the number of samples down from 18 to 12.

New metadata file:

SRR5832182_1.fastq	SRR5832182_2.fastq	EG01	01_Ecoli_15_1	Ecoli	15	1
SRR5832183_1.fastq	SRR5832183_2.fastq	EG02	02_Ecoli_15_2	Ecoli	15	2
SRR5832184_1.fastq	SRR5832184_2.fastq	EG03	02_Ecoli_15_3	Ecoli	15	3
SRR5832189_1.fastq	SRR5832189_2.fastq	EG04	01_Ecoli_25_1	Ecoli	25	1
SRR5832188_1.fastq	SRR5832188_2.fastq	EG05	02_Ecoli_25_2	Ecoli	25	2
SRR5832190_1.fastq	SRR5832190_2.fastq	EG06	02_Ecoli_25_3	Ecoli	25	3
SRR5832191_1.fastq	SRR5832191_2.fastq	EG07	01_Bsubtilis_15_1	Bsubtilis	15	1
SRR5832192_1.fastq	SRR5832192_2.fastq	EG08	02_Bsubtilis_15_2	Bsubtilis	15	2
SRR5832193_1.fastq	SRR5832193_2.fastq	EG09	02_Bsubtilis_15_3	Bsubtilis	15	3
SRR5832197_1.fastq	SRR5832197_2.fastq	EG10	01_Bsubtilis_25_1	Bsubtilis	25	1
SRR5832198_1.fastq	SRR5832198_2.fastq	EG11	02_Bsubtilis_25_2	Bsubtilis	25	2
SRR5832199_1.fastq	SRR5832199_2.fastq	EG12	02_Bsubtilis_25_3	Bsubtilis	25	3
wiki/testpage.txt · Last modified: 2018/11/20 09:54 by erin