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wiki:ucscgb_visualization

Visualizing data using UCSC Genome Browser

References

Prepping .bw files for upload:

  • Behind the scenes, I downloaded all the .bw files.
  • I merged them together using this script: merge_bw script
  • I placed the merged files in an http-viewable location.
  • I used UCSC Genome Browser's upload tracks to link to my files.
  • I prettied up the browser.

Yeast Demo 2018

Exercise

  • Navigate the UCSC Genome browser.
  • Check out cool genes: AGP1, CAN1, HXT1
  • Zoom in;
  • Zoom out

Try downloading an image file:

  • Go to View
  • Go to PDF/PS
  • Click on either the link for PDF or EPS format.
  • Open the downloaded file.
wiki/ucscgb_visualization.txt · Last modified: 2018/11/29 08:51 by erin