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rnaseq_schedule

RNA-seq Fall 2020 Schedule


Topics Reading Assignments
Week 1:
Tuesday
November 10
Course Introduction
Introduction to RNA sequencing
Installing software on SUMMIT
Thursday
November 12
The RNA-seq protocol
Introduction to RNA sequencing II
Pre-processing & quality control I
Reading Assignment #1
due T Nov 17
Homework #1
due T Nov 17
Week 2:
Tuesday
November 17
NO CLASS - Graduate Student Showcase Reading Assignment #2
due T Dec 1
Homework #2
due T Dec 1
Thursday
November 19
Pre-processing & quality control II
Automation I
Automation II
Reading Assignment #3
due T Dec 1
Homework #3
due T Dec 1
Week 3:
Tuesday
November 24
NO CLASS - Break
Thursday
November 26
NO CLASS - Break
Week 4:
Tuesday
December 1
Introduction to Alignment
Building Indices
Alignment Exercise
Reading Assignment #4
due T Dec 8
Homework #4
due T Dec 8
Thursday
December 3
Software Install II
Data acquisition
Tabulation
Automation III
Reading Assignment #5
due T Dec 8
Homework #5
due T Dec 8
Week 5:
Tuesday
December 8
Extra: Syncing
Genome Browsers
Intro to DESeq2
Reading Assignment #6
due T Dec 15
Homework #6 due T Dec 15
Thursday
December 10
Differential Expression Analysis Wilkinson and Friendly
not due
Finals Week:
Thursday
December 17
10 am
Final Project Due

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rnaseq_schedule.txt · Last modified: 2021/06/01 15:05 (external edit)