RNA-seq Fall 2020 Schedule

	Topics	Reading	Assignments
Week 1:
Tuesday November 10	Course Introduction Introduction to RNA sequencing Installing software on SUMMIT
Thursday November 12	The RNA-seq protocol Introduction to RNA sequencing II Pre-processing & quality control I	Reading Assignment #1 due T Nov 17	Homework #1 due T Nov 17
Week 2:
Tuesday November 17	NO CLASS - Graduate Student Showcase	Reading Assignment #2 due T Dec 1	Homework #2 due T Dec 1
Thursday November 19	Pre-processing & quality control II Automation I Automation II	Reading Assignment #3 due T Dec 1	Homework #3 due T Dec 1
Week 3:
Tuesday November 24	NO CLASS - Break
Thursday November 26	NO CLASS - Break
Week 4:
Tuesday December 1	Introduction to Alignment Building Indices Alignment Exercise	Reading Assignment #4 due T Dec 8	Homework #4 due T Dec 8
Thursday December 3	Software Install II Data acquisition Tabulation Automation III	Reading Assignment #5 due T Dec 8	Homework #5 due T Dec 8
Week 5:
Tuesday December 8	Extra: Syncing Genome Browsers Intro to DESeq2	Reading Assignment #6 due T Dec 15	Homework #6 due T Dec 15
Thursday December 10	Differential Expression Analysis	Wilkinson and Friendly not due
Finals Week:
Thursday December 17 10 am	Final Project Due

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Computational biology at CSU